Hello,
When you first connected your 8G HBA the driver automatically loaded within the host OS along with the QLogic Connect utiltiy. WIth the SN1000G HBA the driver on some OS versions does not automatically load. You should try installing the SN1000G back into the server, then load the correct driver for your OS. Once the SN1000Q driver has been loaded confirm on the QLogic Connect utility the HBA can be seen and configured.
If the SN1000Q was previously used in another configuration or server be sure to clear all the old configuration. That HBA can carry the previous configuraiton over which might not be compatable with the MSA array.
Once the driver is loaded and the HBA is working correctly on the host side, check the MSA and be sure the FC host ports being used are in auto mode. At this point you should be able to see the initiators in SMU and perform mapping.
Cheers,
Shawn